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Re: [unclug] Weird problem with FC4-5

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  • From: "John W. Sopko Jr." <sopko AT cs.unc.edu>
  • To: alanh AT unc.edu
  • Cc: UNC Linux Users Group <unclug AT lists.ibiblio.org>
  • Subject: Re: [unclug] Weird problem with FC4-5
  • Date: Thu, 15 Jun 2006 09:45:50 -0400
I also had the clock skew, the clock actually went
backwards! I bet the BIOS fixes it.

Alan Hoyle wrote:
Hmmm, My desktop is an 8187-UN4. I'll check on the BIOS updates.

It's doing it right now actually. The clock also runs really slowly
and skews on the order of minutes.


On 6/15/06, John W. Sopko Jr. <sopko AT cs.unc.edu> wrote:
I had a strange problem where my rhel-4 sytem would come to
a crawl. A critical BIOS update fixed. The system is a
IBM Think Center model 8187UN3. The BIOS update applied
to many IBM desktops.

Alan Hoyle wrote:
> Hey all,
>
> I had been having a problem with FC4 locking up overnight so I tried
> upgrading to FC5, but the problems have continued. Sometimes, I'll be
> able to log in after a looooong delay, and running programs, but I
> don't see any particular program generating load, zombie processes or
> memory usage...Sometimes top reports large percentages of "wa" or "hi"
> usage, but little other stuff.
>
> Anyone have any suggestions?
>
>
> Top report:
>
> top - 22:16:28 up 5:59, 10 users, load average: 7.88, 5.36, 2.39
> Tasks: 127 total, 9 running, 118 sleeping, 0 stopped, 0 zombie
> Cpu(s): 0.0% us, 0.0% sy, 0.0% ni, 0.0% id, 100.0% wa, 0.0% hi,
> 0.0% si, 0.0% st
> Mem: 1002888k total, 656612k used, 346276k free, 57064k buffers
> Swap: 1015800k total, 0k used, 1015800k free, 385416k cached
>
> top - 22:16:32 up 5:59, 10 users, load average: 7.36, 5.33, 2.41
> Tasks: 129 total, 7 running, 122 sleeping, 0 stopped, 0 zombie
> Cpu(s): 0.0% us, 0.0% sy, 0.0% ni, 0.0% id, 0.0% wa, 0.0% hi,
> 0.0% si, 0.0% st
> Mem: 1002888k total, 660444k used, 342444k free, 57076k buffers
> Swap: 1015800k total, 0k used, 1015800k free, 385584k cached
>
>
> [alanh@nelson ~]$ uptime
> 22:14:14 up 5:57, 10 users, load average: 6.92, 3.74, 1.50
> [alanh@nelson ~]$ ps aux
> USER PID %CPU %MEM VSZ RSS TTY STAT START TIME COMMAND
> root 1 0.0 0.0 1992 668 ? S 16:16 0:00 init [5]
> root 2 0.0 0.0 0 0 ? SN 16:16 0:00 [ksoftirqd/0]
> root 3 0.0 0.0 0 0 ? S 16:16 0:00 [watchdog/0]
> root 4 0.0 0.0 0 0 ? S< 16:16 0:00 [events/0]
> root 5 0.0 0.0 0 0 ? S< 16:16 0:00 [khelper]
> root 6 0.0 0.0 0 0 ? S< 16:16 0:00 [kthread]
> root 8 0.0 0.0 0 0 ? S< 16:16 0:00 [kblockd/0]
> root 9 0.0 0.0 0 0 ? S< 16:16 0:00 [kacpid]
> root 99 0.0 0.0 0 0 ? S< 16:16 0:00 [khubd]
> root 154 0.0 0.0 0 0 ? S 16:16 0:00 [pdflush]
> root 155 0.0 0.0 0 0 ? S 16:16 0:00 [pdflush]
> root 157 0.0 0.0 0 0 ? S< 16:16 0:00 [aio/0]
> root 156 0.0 0.0 0 0 ? S 16:16 0:00 [kswapd0]
> root 244 0.0 0.0 0 0 ? S< 16:16 0:00 [kseriod]
> root 316 0.0 0.0 0 0 ? S< 16:16 0:00 [kpsmoused]
> root 334 0.0 0.0 0 0 ? S< 16:16 0:00 [kmirrord]
> root 346 0.0 0.0 0 0 ? D 16:16 0:00 [kjournald]
> root 413 0.0 0.0 2212 656 ? S<s 16:16 0:00 /sbin/udevd -d
> root 1167 0.0 0.0 0 0 ? S 16:16 0:00 [kjournald]
> root 1440 0.0 0.0 1652 552 ? Ds 16:17 0:00 syslogd -m 0
> root 1443 0.0 0.0 1600 388 ? Ss 16:17 0:00 klogd -x
> rpc 1454 0.0 0.0 1736 556 ? Ss 16:17 0:00 portmap
> rpcuser 1473 0.0 0.0 1844 804 ? Ss 16:17 0:00 rpc.statd
> root 1489 0.0 0.0 11988 624 ? S<sl 16:17 0:00 auditd
> root 1491 0.0 0.0 0 0 ? S< 16:17 0:00 [kauditd]
> root 1517 0.0 0.0 4724 580 ? Ss 16:17 0:00 rpc.idmapd
> dbus 1532 0.0 0.1 13316 1108 ? Ssl 16:17 0:00
> dbus-daemon --system
> root 1542 0.0 0.0 2288 880 ? Ss 16:17 0:00 hcid:
> processing events
> root 1545 0.0 0.0 1664 476 ? Ss 16:17 0:00 sdpd
> root 1557 0.0 0.0 0 0 ? S< 16:17 0:00 [krfcommd]
> root 1590 0.0 0.0 1816 456 ? Ss 16:17 0:00
> /usr/bin/hidd --server
> nut 1603 0.0 0.0 1660 412 ? Ss 16:17 0:00
> /sbin/bestups /dev/ttyS0
> nut 1606 0.0 0.0 1672 376 ? Ss 16:17 0:00 /usr/sbin/upsd
> root 1609 0.0 0.0 1660 564 ? Ss 16:17 0:00
> /usr/sbin/upsmon
> nut 1610 0.0 0.0 1660 564 ? S 16:17 0:00
> /usr/sbin/upsmon
> root 1693 0.0 0.0 1876 724 ? Ss 16:17 0:00
> /usr/sbin/automount --timeout=
> root 1705 0.0 0.0 1596 456 ? Ss 16:17 0:00 /usr/sbin/acpid
> root 1724 0.0 0.2 9256 2268 ? Ss 16:17 0:00 cupsd
> root 1732 0.0 0.1 4976 1100 ? Ss 16:17 0:00 /usr/sbin/sshd
> ntp 1748 0.0 0.4 4248 4248 ? SLs 16:17 0:00 ntpd
> -u ntp:ntp -p /var/run/nt
> root 1785 0.0 0.0 0 0 ? S 16:17 0:00
> [afs_rxlistener]
> root 1787 0.0 0.0 0 0 ? S 16:17 0:00 [afs_callback]
> root 1789 0.0 0.0 0 0 ? S 16:17 0:00 [afs_rxevent]
> root 1791 0.0 0.0 1948 352 ? Ss 16:17 0:00
> /usr/vice/etc/afsd -fakestat -
> root 1793 0.0 0.0 0 0 ? S 16:17 0:00 [afsd]
> root 1795 0.0 0.0 0 0 ? S 16:17 0:00
> [afs_checkserver]
> root 1797 0.0 0.0 0 0 ? S 16:17 0:00
> [afs_background]
> root 1799 0.0 0.0 0 0 ? S 16:17 0:00
> [afs_background]
> root 1801 0.0 0.0 0 0 ? S 16:17 0:00 [afs_cachetrim]
> root 1819 0.0 0.1 8388 1932 ? Ss 16:17 0:00
> sendmail: accepting connection
> smmsp 1828 0.0 0.1 7360 1724 ? Ss 16:17 0:00
> sendmail: Queue runner@01:00:0
> root 1838 0.0 0.0 1824 344 ? Ss 16:17 0:00 gpm
> -m /dev/input/mice -t imps
> root 1848 0.0 1.0 25928 10720 ? Ss 16:17 0:00 /usr/sbin/httpd
> nobody 1857 0.0 0.0 1768 676 ? Ss 16:17 0:00
> /usr/local/bin/noip2
> root 1866 0.0 0.1 5184 1204 ? Ss 16:17 0:00 crond
> apache 1880 0.0 0.8 27664 8436 ? S 16:17 0:00 /usr/sbin/httpd
> apache 1881 0.0 0.8 27496 8404 ? S 16:17 0:00 /usr/sbin/httpd
> apache 1882 0.0 0.8 27348 8244 ? S 16:17 0:00 /usr/sbin/httpd
> apache 1883 0.0 0.8 27432 8304 ? S 16:17 0:00 /usr/sbin/httpd
> apache 1884 0.0 0.8 27512 8420 ? S 16:17 0:01 /usr/sbin/httpd
> apache 1885 0.0 0.8 27520 8416 ? S 16:17 0:00 /usr/sbin/httpd
> apache 1886 0.0 0.8 27360 8280 ? S 16:17 0:00 /usr/sbin/httpd
> apache 1887 0.0 0.8 27496 8392 ? S 16:17 0:00 /usr/sbin/httpd
> xfs 1903 0.0 0.3 5728 3860 ? Ss 16:17 0:00 xfs
> -droppriv -daemon
> root 1920 0.0 0.0 2164 452 ? Ss 16:17 0:00 /usr/sbin/atd
> avahi 1933 0.0 0.1 3828 1592 ? Ss 16:17 0:05
> avahi-daemon: running [nelson.
> avahi 1934 0.0 0.0 2804 312 ? Ss 16:17 0:00
> avahi-daemon: chroot helper pr
> root 1943 0.0 0.1 3132 1148 ? Ss 16:17 0:00
> cups-config-daemon
> 68 1953 0.0 0.3 4968 3312 ? Ss 16:17 0:01 hald
> root 1954 0.0 0.1 3136 1020 ? S 16:17 0:00 hald-runner
> 68 1960 0.0 0.0 2236 872 ? S 16:17 0:00
> /usr/libexec/hald-addon-acpi
> 68 1966 0.0 0.0 2236 872 ? S 16:17 0:00
> /usr/libexec/hald-addon-keyboa
> root 1974 0.0 0.0 2192 704 ? S 16:17 0:00
> /usr/libexec/hald-addon-storag
> root 1986 0.0 0.0 1588 404 tty1 Ss+ 16:17 0:00
> /sbin/mingetty tty1
> root 1987 0.0 0.0 1588 404 tty2 Ss+ 16:17 0:00
> /sbin/mingetty tty2
> root 1988 0.0 0.0 1588 408 tty3 Ss+ 16:17 0:00
> /sbin/mingetty tty3
> root 1989 0.0 0.0 1588 408 tty4 Ss+ 16:17 0:00
> /sbin/mingetty tty4
> root 1990 0.0 0.0 1584 404 tty5 Ss+ 16:17 0:00
> /sbin/mingetty tty5
> root 1991 0.0 0.0 1588 408 tty6 Ss+ 16:17 0:00
> /sbin/mingetty tty6
> root 1992 0.0 0.1 4448 1228 ? Ss 16:17 0:00
> /bin/sh /etc/X11/prefdm -nodae
> root 1993 0.0 0.3 19600 3316 ? Ssl 16:17 0:00
> /usr/bin/dsmc sched
> root 2058 0.0 0.2 12860 2632 ? S 16:17 0:00
> /usr/sbin/gdm-binary -nodaemon
> root 2084 0.0 0.2 13528 2904 ? S 16:17 0:00
> /usr/sbin/gdm-binary -nodaemon
> root 2087 1.0 3.1 37936 31344 tty7 Ss+ 16:17 3:55
> /usr/bin/Xorg :0 -auth /var/gd
> apache 2131 0.0 0.8 27376 8292 ? S 16:17 0:00 /usr/sbin/httpd
> alanh 2136 0.0 2.1 28892 21696 ? Ss 16:17 0:18 enlightenment
> alanh 2179 0.0 0.0 4100 680 ? Ss 16:17 0:00
> /usr/bin/ssh-agent /usr/bin/db
> alanh 2182 0.0 0.0 2896 492 ? S 16:17 0:00
> /usr/bin/dbus-launch --exit-wi
> alanh 2183 0.0 0.1 13312 1284 ? Ssl 16:17 0:00
> dbus-daemon --fork --print-pid
> alanh 2187 0.0 0.7 32364 7928 ? Ssl 16:17 0:00
> /usr/libexec/gnome-settings-da
> alanh 2190 0.0 0.3 7032 3460 ? S 16:17 0:00
> /usr/libexec/gconfd-2 15
> alanh 2201 0.0 0.1 3276 1648 ? Ss 16:18 0:00
> /usr/bin/esd -terminate -nobee
> alanh 2205 0.0 0.2 7176 2588 ? Ss 16:18 0:00
> /usr/libexec/bonobo-activation
> alanh 2210 0.0 1.8 98512 18572 ? Ssl 16:18 0:08 gnome-terminal
> alanh 2211 0.0 0.0 2228 616 ? S 16:18 0:00
> gnome-pty-helper
> alanh 2231 0.0 0.2 4348 2132 ? S 16:18 0:00
> xscreensaver -nosplash
> alanh 2233 0.0 0.1 4584 1524 pts/2 Ss+ 16:18 0:00 bash
> alanh 2236 0.0 0.1 4580 1556 pts/3 Ss+ 16:18 0:00 bash
> alanh 2250 0.0 0.1 4584 1544 pts/4 Ss+ 16:18 0:00 bash
> alanh 2294 0.0 0.7 13208 7932 pts/3 S 16:19 0:00 emacs ccipiw.ph
> alanh 2362 0.0 0.2 27808 2336 ? Ssl 16:21 0:02 synergys
> alanh 2502 0.0 0.1 4584 1524 pts/5 Ss+ 16:30 0:00 bash
> alanh 2518 0.0 0.1 4580 1520 pts/6 Ss+ 16:31 0:00 bash
> alanh 2534 0.0 0.1 4580 1520 pts/7 Ss+ 16:31 0:00 bash
> alanh 2555 0.9 12.9 177396 129468 ? Ss 16:32 3:10
> /usr/lib/opera/9.0-20060614.6/
> alanh 2568 0.0 0.0 0 0 ? Z 16:32 0:00
> [operapluginwrap] <defunct>
> apache 2696 0.0 0.8 27204 8100 ? S 16:45 0:00 /usr/sbin/httpd
> alanh 3153 0.0 0.1 4584 1508 pts/1 Ss+ 17:49 0:00 bash
> apache 4222 0.0 0.8 27204 8044 ? S 20:53 0:00 /usr/sbin/httpd
> apache 4658 0.0 0.7 27208 7924 ? S 22:10 0:00 /usr/sbin/httpd
> apache 4659 0.0 0.5 25928 5720 ? S 22:10 0:00 /usr/sbin/httpd
> apache 4660 0.0 0.7 27128 7928 ? S 22:10 0:00 /usr/sbin/httpd
> apache 4669 0.0 0.5 25928 5724 ? S 22:11 0:00 /usr/sbin/httpd
> apache 4679 0.0 0.5 25928 5724 ? S 22:12 0:00 /usr/sbin/httpd
> root 4681 0.0 0.2 7796 2364 ? Ss 22:12 0:00 sshd:
> alanh [priv]
> root 4686 0.0 0.2 7792 2372 ? Ss 22:12 0:00 sshd:
> alanh [priv]
> apache 4690 0.0 0.5 25928 5712 ? S 22:12 0:00 /usr/sbin/httpd
> apache 4691 0.0 0.5 25928 5724 ? S 22:12 0:00 /usr/sbin/httpd
> apache 4692 0.0 0.7 27128 7924 ? S 22:12 0:00 /usr/sbin/httpd
> root 4694 0.0 0.2 6352 2136 ? Ss 22:13 0:00 sshd:
> alanh [priv]
> sshd 4695 0.0 0.1 6344 1424 ? S 22:13 0:00 sshd:
> alanh [net]
> apache 4698 0.0 0.7 27100 7892 ? S 22:13 0:00 /usr/sbin/httpd
> alanh 4699 0.0 0.1 7956 1780 ? S 22:13 0:00 sshd:
> alanh@pts/9
> alanh 4704 0.0 0.1 7792 1776 ? S 22:13 0:00 sshd:
> alanh@pts/8
> alanh 4705 0.0 0.1 4584 1520 pts/8 Ss 22:13 0:00 -bash
> alanh 4725 0.0 0.1 4580 1516 pts/9 Ss 22:13 0:00 -bash
> alanh 4747 0.0 0.1 2124 1032 pts/9 S+ 22:14 0:00 top
> alanh 4751 0.0 0.0 4184 952 pts/8 R+ 22:14 0:00 ps aux
>

--
John W. Sopko Jr. University of North Carolina
email: sopko AT cs.unc.edu Computer Science Dept., CB 3175
Phone: 919-962-1844 Sitterson Hall; Room 044
Fax: 919-962-1799 Chapel Hill, NC 27599-3175




--
John W. Sopko Jr. University of North Carolina
email: sopko AT cs.unc.edu Computer Science Dept., CB 3175
Phone: 919-962-1844 Sitterson Hall; Room 044
Fax: 919-962-1799 Chapel Hill, NC 27599-3175


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